The X-Files
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| Award | Year (↑) | Category | Nominee / Winner | Person |
|---|---|---|---|---|
| TV Guide Award (televised) | 1999 | Favorite Drama Series | Nominee | |
| Screen Actors Guild Award | 1999 | Outstanding Performance by an Ensemble in a Television Drama Series | Nominee | |
| Online Television Academy Award | 1999 | Best Direction in a Drama Series | Nominee | |
| Saturn Award | 1999 | Best Network Series | Winner | |
| Saturn Award | 1999 | Best Television Actor | Nominee | David Duchovny |
| Viewers for Quality Television Award | 1999 | Best Actress in a Quality Drama Series | Winner | Gillian Anderson |
| Online Television Academy Award | 1999 | Best Writing in a Drama Series | Nominee | |
| Saturn Award | 1999 | Best Television Actress | Nominee | Gillian Anderson |
| BAFTA TV Award | 1999 | Best International Programme or Series | Nominee | |
| Online Television Academy Award | 1999 | Best Scoring in a Television Series | Nominee | |
| Cadet Award | 1999 | Outstanding Lead Actor in a Drama Series | Nominee | David Duchovny |
| Cadet Award | 1999 | Outstanding Lead Actress in a Drama Series | Nominee | Gillian Anderson |
| Petcabus Award | 1999 | Best Drama Series | Nominee | |
| Online Television Academy Award | 1999 | Best Editing in a Television Series | Nominee | |
| Online Television Academy Award | 1999 | Best Cinematography in a Series | Winner | |
| Online Television Academy Award | 1999 | Best Production Design in a Television Series | Nominee | |
| Electronic Media's Critics Poll | 1999.01 | Best Television Series (#17) | Winner | |
| Electronic Media's Critics Poll | 1999.07 | Best Television Series (#17) | Winner | |
| Emmy Award | 2000 | Outstanding Sound Editing for a Series | Nominee | |
| Cadet Award | 2000 | Outstanding Makeup/Hairstyling | Nominee | |
| Cadet Award | 2000 | Outstanding Visual Effects | Nominee | |
| Emmy Award | 2000 | Outstanding Sound Mixing for a Drama Series | Winner | |
| Golden Reel Award (MPSE) | 2000 | Outstanding Sound Editing in Episodic Television | Nominee | |
| Emmy Award | 2000 | Outstanding Special Visual Effects for a Series | Winner | |
| Emmy Award | 2000 | Outstanding Special Visual Effects for a Series | Nominee | |
| Online Television Academy Award | 2000 | Best Lead Actress in a Drama Series | Nominee | Gillian Anderson |
| Hollywood Makeup Artist & Hair Stylist Guild Award | 2000 | Best Period Makeup in a Television Series | Winner | |
| Hollywood Makeup Artist & Hair Stylist Guild Award | 2000 | Best Character Makeup in a Television Series | Nominee | |
| American Cinematographers Award | 2000 | Outstanding Cinematography in a Television Series | Nominee | Joel Ransom |
| American Cinematographers Award | 2000 | Outstanding Cinematography in a Television Series | Winner | Bill Roe |
| RATTY Award | 2000 | Best Lead Actor in a Science Fiction Series | Nominee | David Duchovny |
| Entertainment Weekly's Best/Worst List | 2000 | The Ten Best (#6) | Winner | |
| RATTY Award | 2000 | Best Lead Actress in a Science Fiction Series | Nominee | Gillian Anderson |
| TV Times Readers' Choice | 2000 | Best Actor in a Drama (#1) | Voted | David Duchovny |
| Environmental Media Association Award | 2000 | Television Episodic Drama | Nominee | |
| Salon's Best/Worst | 2000 | Ten Best Shows (#8) | Winner | |
| Art Directors Guild Award | 2000 | Excellence in Production Design in Television | Nominee | Corey Kaplan |
| Online Television Academy Award | 2000 | Best Direction in a Drama Series | Nominee | |
| International Horror Guild Award | 2000 | Best Horror Television | Winner | |
| Cadet Award | 2000 | Outstanding Lead Actor in a Drama Series | Nominee | David Duchovny |
| Cadet Award | 2000 | Outstanding Lead Actress in a Drama Series | Nominee | Gillian Anderson |
| Young Artist Award | 2000 | Best Performance by a Young Actor (Ten or Under) in a Television Drama Series | Nominee | Jeffrey Schoeny |
| RATTY Award | 2000 | Best Guest Actor in a Science Fiction Series | Nominee | William B. Davis |
| RATTY Award | 2000 | Best Guest Actress in a Science Fiction Series | Nominee | Tea Leoni |
| Cinema Audio Society Award | 2000 | Outstanding Achievement in Sound Mixing for a Television Series | Nominee | |
| Emmy Award | 2000 | Outstanding Makeup for a Series | Winner | |
| Emmy Award | 2000 | Outstanding Dramatic Underscore for a Series | Nominee | |
| Kids Choice Award | 2000 | Favorite TV Friends | Nominee | Gillian Anderson, David Duchovny |
| Online Television Academy Award | 2000 | Best Scoring in a Television Series | Nominee | |
| Screen Actors Guild Award | 2000 | Outstanding Performance by an Actor in a Television Drama Series | Nominee | David Duchovny |
